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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66856225_66878755_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
66856225 - 66878755
Intron Length:
22531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCCT
5'SS Class:
major
3'SS Sequence:
CTGTTTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTTAT
U12 Branch Point Sequence:
GTTTACTTAACC
Flanking Amino Acid:
VSSHNHQDKKGVIRESYLKG
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
67
44.2
Major BPS
81.3
0.78
1.1
71.7
44.6
Major PPT
83.6
0.75
0.8
81.4
34.9
Minor 5ss
33
-1.9
3.3
40.8
45
Minor BPS
79
0.89
1.4
84.69
33.3

Associated Gene:

Gene:
SEMA6A
Ensembl Gene ID:
ENSAPLG00000014502
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034437
66816677 - 66879945
63269
ENSAPLT00000024342
66816677 - 66879945
63269
ENSAPLT00000015153
66816677 - 66879945
63269