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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_6687909_6690950_R

Intron Information:

Intron Rank:
140999
Intron Class:
major
Intron Phase:
Intron Coordinates:
6687909 - 6690950
Intron Length:
3042

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAATAAA
5'SS Class:
major
3'SS Sequence:
TTTTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TTATCATTATTA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1
78.6
30
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
94.5
1
0.5
93.1
16
Minor 5ss
36.8
-1.5
2.9
46.3
42.4
Minor BPS
59.8
0.3
1.8
73.6
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023182
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019481
6687588 - 6697700
10113