About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_66924479_67029120_R

Intron Information:

Intron Rank:
5
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
66924479 - 67029120
Intron Length:
104642

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
ACCCTTCCCAAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
CACTTTCTAATT
Flanking Amino Acid:
ELGVSNEDSKESGRRKGSDY
Intron Amino Acid Position:
168

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
59.7
0.22
1
59.2
29.7
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
50.3
0.09
1.7
64.52
40.9

Associated Gene:

Gene:
COMMD10
Ensembl Gene ID:
ENSAPLG00000025560
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036312
66916174 - 67047496
131323