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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67043819_67045383_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67043819 - 67045383
Intron Length:
1565

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATCAT
5'SS Class:
major
3'SS Sequence:
TTCATTCATACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTCATA
Flanking Amino Acid:
LETISFILEQAVYHNLKPAS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.64
1
71.4
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.9
73
36.4
Minor 5ss
34.2
-1.8
3.3
49.6
46.6
Minor BPS
63
0.4
2
80.44
35.6

Associated Gene:

Gene:
COMMD10
Ensembl Gene ID:
ENSAPLG00000025560
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031711
66942414 - 67047686
105273
ENSAPLT00000036575
66942414 - 67047496
105083
ENSAPLT00000028039
66895711 - 67047686
151976
ENSAPLT00000036312
66916174 - 67047496
131323
ENSAPLT00000027259
66942414 - 67047686
105273
ENSAPLT00000035901
66942414 - 67047686
105273
ENSAPLT00000015099
66895711 - 67047496
151786
ENSAPLT00000035617
67013258 - 67047686
34429
ENSAPLT00000038511
67015484 - 67047686
32203