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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67047361_67047464_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67047361 - 67047464
Intron Length:
104

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCGGCT
5'SS Class:
major
3'SS Sequence:
TCCTTCCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
CTCCTCTCATCT
Flanking Amino Acid:
MAAPVVPETDSIRRAVSLLN
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.7
0.39
1.2
64.1
39.3
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
78.2
0.63
0.7
73
25.2
Minor 5ss
36
-1.6
3.9
56.2
48.2
Minor BPS
47.9
-0
1.8
64.89
45.6

Associated Gene:

Gene:
COMMD10
Ensembl Gene ID:
ENSAPLG00000025560
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036575
66942414 - 67047496
105083
ENSAPLT00000036312
66916174 - 67047496
131323
ENSAPLT00000015099
66895711 - 67047496
151786