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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67072671_67074189_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67072671 - 67074189
Intron Length:
1519

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAATGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTATTTATTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
GTTTATTTATTC
Flanking Amino Acid:
FVNTDVQIQELQVFYNTTLE
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
74.7
35.6
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
86.3
0.82
0.8
85.5
34
Minor 5ss
31.4
-2.1
3.2
39.6
46.4
Minor BPS
55.3
0.15
1.7
67.83
38

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000043486
67072524 - 67114319
41796