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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67074266_67076778_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67074266 - 67076778
Intron Length:
2513

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGTAA
5'SS Class:
strong_major
3'SS Sequence:
CTCAACTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
TTTGTCTCAACT
Flanking Amino Acid:
VTENWPLLNERYGKELLHDV
Intron Amino Acid Position:
901

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
73.6
33
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
75.7
0.58
0.9
68
37.2
Minor 5ss
42.1
-0.9
3.1
54.8
49.4
Minor BPS
70.2
0.71
1.6
87.74
37.8

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043486
67072524 - 67114319
41796
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796