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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67079130_67083247_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67079130 - 67083247
Intron Length:
4118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TACCTTTTAACC
Flanking Amino Acid:
YTKWMDNPQYKIPFLIRRTV
Intron Amino Acid Position:
797

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
83.6
27.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
89.9
0.9
0.7
84.7
30.1
Minor 5ss
38.8
-1.3
3.1
49.9
40.5
Minor BPS
66.3
0.49
1.2
68.28
37.3

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000043486
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868