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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67083356_67084050_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67083356 - 67084050
Intron Length:
695

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATT
5'SS Class:
strong_major
3'SS Sequence:
GCTTCCCTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
CTATCTTTTATT
Flanking Amino Acid:
VDALEHDYFAKVYLEKLFAT
Intron Amino Acid Position:
761

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.8
93.7
19.8
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
67.8
0.4
1
64.2
37
Minor 5ss
43.4
-0.7
2.9
60.8
37.6
Minor BPS
62.7
0.48
1.6
76.05
41

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000043486
67072524 - 67114319
41796