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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67086716_67088195_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67086716 - 67088195
Intron Length:
1480

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATGCTTTCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
GATCTATTAACA
Flanking Amino Acid:
LVHLLENDPKAIPAVSRFQL
Intron Amino Acid Position:
660

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
79.4
0.66
0.9
73.7
36.2
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
59.8
0.3
1.6
68.27
37

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000043486
67072524 - 67114319
41796