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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67091905_67093358_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67091905 - 67093358
Intron Length:
1454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTTTA
5'SS Class:
major
3'SS Sequence:
TTCTTTTCGTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTTTTTTTTCT
Flanking Amino Acid:
KNENTSTDSYNNTWIVPISW
Intron Amino Acid Position:
587

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
0.9
79.5
29.4
Major BPS
83
0.82
0.8
82
24.9
Major PPT
71.5
0.49
1.1
79.2
33.2
Minor 5ss
55.6
0.19
2.3
66.5
39
Minor BPS
45.5
-0.2
3.6
82.93
38.6

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043486
67072524 - 67114319
41796
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796