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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67094567_67094701_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67094567 - 67094701
Intron Length:
135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTTTG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTCATGAATT
Flanking Amino Acid:
TEKLFIKALNLYLKEFSFSN
Intron Amino Acid Position:
508

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
1
80.8
34.4
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
46.2
-0.4
2.8
62.9
41.8
Minor BPS
57
0.3
1.8
73.82
43.2

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868