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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67094567_67095086_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67094567 - 67095086
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAAAAA
5'SS Class:
major
3'SS Sequence:
TGTTTTCCTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
CTCTCATGAATT
Flanking Amino Acid:
SLFDSITYNKLYLKEFSFSN
Intron Amino Acid Position:
486

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
0.9
75.4
28.5
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.8
0.83
0.7
81.7
30.4
Minor 5ss
26.7
-2.7
2.8
30.6
42.8
Minor BPS
57
0.3
1.8
73.82
43.2

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043486
67072524 - 67114319
41796