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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67095231_67097453_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67095231 - 67097453
Intron Length:
2223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTCTAT
U12 Branch Point Sequence:
CTCACTTAGATT
Flanking Amino Acid:
ATFVEPRLSLDKIFYDHVVQ
Intron Amino Acid Position:
438

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.7
0.91
0.8
80.6
31.8
Major BPS
73.8
0.59
1.3
72.8
43
Major PPT
96.2
1.04
0.5
92.4
17.6
Minor 5ss
35.5
-1.6
3.3
47.5
42.3
Minor BPS
48
-0
1.7
62.56
42.7

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796
ENSAPLT00000043486
67072524 - 67114319
41796
ENSAPLT00000026132
67072524 - 67114319
41796