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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67104814_67113687_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67104814 - 67113687
Intron Length:
8874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
ATTTTGTATATAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGTAT
U12 Branch Point Sequence:
TTTATCCTATTT
Flanking Amino Acid:
LTRYTDQGRSSMLIASQLEP
Intron Amino Acid Position:
211

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.4
0.81
1
73.2
37.5
Major BPS
71.5
0.53
1.4
71.7
44.6
Major PPT
75.1
0.56
0.9
70.1
40
Minor 5ss
31.6
-2.1
3.4
43.4
44.3
Minor BPS
51.4
0.12
1.9
76.97
39.8

Associated Gene:

Gene:
LVRN
Ensembl Gene ID:
ENSAPLG00000013734
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043486
67072524 - 67114319
41796
ENSAPLT00000026132
67072524 - 67114319
41796
ENSAPLT00000019786
67073452 - 67114319
40868
ENSAPLT00000014304
67072524 - 67114319
41796