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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67155280_67158414_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67155280 - 67158414
Intron Length:
3135

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
DAQNKLEKSETFIFQSPRQD
Intron Amino Acid Position:
224

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.6
1
0.8
84.6
33.3
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
37.1
-1.5
3
48.5
47.2
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
AP3S1
Ensembl Gene ID:
ENSAPLG00000013535
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014121
67148763 - 67181420
32658