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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67183433_67183783_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67183433 - 67183783
Intron Length:
351

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGACTTTC
5'SS Class:
major
3'SS Sequence:
TGTTTTATTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTTAT
U12 Branch Point Sequence:
TTTTGTTTTATT
Flanking Amino Acid:
PDQEVGTLYECFGSDGKLVL
Intron Amino Acid Position:
199

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.8
0.7
1.1
78.3
32.5
Major BPS
78.7
0.71
1.2
71.7
44.6
Major PPT
86.7
0.83
0.8
81.8
34.6
Minor 5ss
44.9
-0.6
2.8
61.1
43.8
Minor BPS
59.2
0.37
2
83.31
38.3

Associated Gene:

Gene:
ATG12
Ensembl Gene ID:
ENSAPLG00000017775
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020192
67181185 - 67183843
2659