Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67195195_67196937_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

67195195 - 67196937

Intron Length:

1743

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CCG|GTACGGAGC

5'SS Class:

major

3'SS Sequence:

CTTTGTATTTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTGTAT

U12 Branch Point Sequence:

AGTACAGTAAAA

Flanking Amino Acid:

WLQYAKFDQYRYTRNLVDNG

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

70.6

0.49

1.1

59.3

45.5

Major BPS

71.5

0.53

1.4

71.7

44.6

Major PPT

84.2

0.77

0.8

81.4

34.9

Minor 5ss

-2.1

3.3

43.1

44.4

Minor BPS

44.1

-0.4

2.3

58.39

40.2

Associated Gene:

Gene:

CDO1

Ensembl Gene ID:

ENSAPLG00000013485

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031374

67195016 - 67202542

7527

ENSAPLT00000014042

67195016 - 67204616

9601