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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67201854_67204186_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67201854 - 67204186
Intron Length:
2333

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TCTTCCCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTTCTTAAAG
Flanking Amino Acid:
YSQFGERTLCATAVPQENN*
Intron Amino Acid Position:
196

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.2
0.55
1.1
65.7
45.7
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
87.5
0.84
0.6
85
22.6
Minor 5ss
37.1
-1.5
2.8
43.3
43.7
Minor BPS
71
0.52
1.5
72.05
40.8

Associated Gene:

Gene:
CDO1
Ensembl Gene ID:
ENSAPLG00000013485
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014042
67195016 - 67204616
9601