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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67300313_67301929_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67300313 - 67301929
Intron Length:
1617

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGTCCT
5'SS Class:
strong_major
3'SS Sequence:
GTTTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTGT
U12 Branch Point Sequence:
GTTTGTTTTATA
Flanking Amino Acid:
RRHRELMEREMKTQSSLPEK
Intron Amino Acid Position:
335

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
1
75.3
40.8
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
81.9
0.72
0.8
76.5
37.7
Minor 5ss
35.5
-1.7
3.2
50.7
45.7
Minor BPS
50.5
0.01
2
67.32
39.4

Associated Gene:

Gene:
MARVELD2
Ensembl Gene ID:
ENSAPLG00000023851
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019571
67296473 - 67309435
12963