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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67301963_67302985_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67301963 - 67302985
Intron Length:
1023

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGAAGC
5'SS Class:
strong_major
3'SS Sequence:
TTTTAAAACTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TTCCTTTTAAAA
Flanking Amino Acid:
KTQSSLPEKKYDSDDGPREE
Intron Amino Acid Position:
346

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81
0.73
1
69.9
41.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
66.7
0.38
1
64.8
40.3
Minor 5ss
32.4
-2
3.2
43.2
44
Minor BPS
62.5
0.39
1.4
69.31
37

Associated Gene:

Gene:
MARVELD2
Ensembl Gene ID:
ENSAPLG00000023851
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019571
67296473 - 67309435
12963