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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67303883_67304291_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67303883 - 67304291
Intron Length:
409

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTTCTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
ATGTGTTTAAAA
Flanking Amino Acid:
QLPHHPGSIYEQERISKVLQ
Intron Amino Acid Position:
449

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
81.2
0.7
0.7
80.6
24.7
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
55.6
0.17
1.9
66.61
40

Associated Gene:

Gene:
MARVELD2
Ensembl Gene ID:
ENSAPLG00000023851
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019571
67296473 - 67309435
12963