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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67314884_67314991_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67314884 - 67314991
Intron Length:
108

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGGGTGCG
5'SS Class:
major
3'SS Sequence:
TGTTTCCGTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAG
U12 Branch Point Sequence:
TGGTGCTGAGGC
Flanking Amino Acid:
KRWEGGYERTWEILKEDESG
Intron Amino Acid Position:
19

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
58.5
40.7
Major BPS
52.2
0.06
1.6
51.1
46.3
Major PPT
78.8
0.65
0.9
73.7
36.9
Minor 5ss
26.3
-2.7
3.2
28.5
38.7
Minor BPS
41.4
-0.6
2.2
51.8
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721