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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67315070_67316085_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67315070 - 67316085
Intron Length:
1016

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAGCGC
5'SS Class:
major
3'SS Sequence:
TGTGTTTTAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
TGTGTTTTAATA
Flanking Amino Acid:
EDILFKAKRKRLHEHHGQVR
Intron Amino Acid Position:
45

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.6
0.42
1.1
52.2
44.9
Major BPS
69.9
0.5
1
73
31.5
Major PPT
73.4
0.53
1
69.9
40.3
Minor 5ss
29.4
-2.4
3.5
42
44.8
Minor BPS
65.8
0.49
1.3
70.9
36

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721