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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67316911_67317723_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67316911 - 67317723
Intron Length:
813

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCCA
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTATAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTAAA
U12 Branch Point Sequence:
TTTTTCTTTATA
Flanking Amino Acid:
KPNRLTCTLKLLEYFVEEYF
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
66.1
39.2
Major BPS
66.4
0.41
1.1
67.7
36.5
Major PPT
91.9
0.94
0.6
88.3
21.5
Minor 5ss
40.7
-1
2.7
51.5
44.8
Minor BPS
72.4
0.7
1.5
82.54
31.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721