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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67321069_67322283_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67321069 - 67322283
Intron Length:
1215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAGGATAT
5'SS Class:
major
3'SS Sequence:
CTTTTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATGTTTAAAA
Flanking Amino Acid:
SSSECSLIRMGFPQHTIASL
Intron Amino Acid Position:
253

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
68.6
39.1
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
93.3
0.97
0.6
92.4
17.9
Minor 5ss
37.8
-1.4
3.4
47
48.4
Minor BPS
61
0.34
1.8
73.34
38.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721