About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67322348_67323182_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67322348 - 67323182
Intron Length:
835

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGC|GTAAGTAGA
5'SS Class:
major
3'SS Sequence:
TTCTTTGCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAT
U12 Branch Point Sequence:
ATTTTCTTACAT
Flanking Amino Acid:
DQDAKPSFSMAQLENNSEPG
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.9
0.47
1.3
68.9
43.8
Major BPS
96.4
1.15
0.6
85.7
34.9
Major PPT
84.3
0.77
0.8
76.9
37.3
Minor 5ss
36
-1.6
2.7
37.9
40
Minor BPS
65.6
0.57
1.7
83.22
37.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721