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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67324884_67325179_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67324884 - 67325179
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
ATTTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
TTTCAGTTAAAA
Flanking Amino Acid:
EMPLEEYQGERYCQGCHGEI
Intron Amino Acid Position:
343

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
85.3
0.79
0.7
78.4
35.6
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
49.7
-0
2.3
71.52
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721