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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67325220_67325428_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67325220 - 67325428
Intron Length:
209

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CTTTTCCACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TCTAATTTAACT
Flanking Amino Acid:
GCHGEIKDQNVYICKVCQNA
Intron Amino Acid Position:
357

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.8
34.5
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
78
0.63
0.8
73.1
30.8
Minor 5ss
41.8
-0.9
2.8
56.1
41.3
Minor BPS
67.8
0.64
1.5
81.56
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010495
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010952
67314828 - 67326548
11721