About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67342919_67343406_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67342919 - 67343406
Intron Length:
488

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGCTTA
5'SS Class:
strong_major
3'SS Sequence:
TACTTCAATATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAACT
Flanking Amino Acid:
IPPAAPSLGRSGSKLRTPPP
Intron Amino Acid Position:
183

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
75
38.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
68.6
0.42
0.9
63.1
37.1
Minor 5ss
47
-0.3
2.8
56.2
48
Minor BPS
94.2
1.47
0.6
103.6
17.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010912
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046299
67340379 - 67347045
6667
ENSAPLT00000038833
67341143 - 67347418
6276
ENSAPLT00000011371
67341143 - 67346620
5478