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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67344096_67353511_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67344096 - 67353511
Intron Length:
9416

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCAAG
5'SS Class:
major
3'SS Sequence:
TTAAATTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAA
U12 Branch Point Sequence:
TTCCTCTTAAAT
Flanking Amino Acid:
TFHCSRRERGSDDKADSSND
Intron Amino Acid Position:
33

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.2
68.8
43.8
Major BPS
77.8
0.69
1
78.2
31.8
Major PPT
78.7
0.65
1
69.7
45.3
Minor 5ss
44.3
-0.6
2.7
56.9
47.4
Minor BPS
70.4
0.72
1.4
82.38
38.6

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789