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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67345316_67345818_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
67345316 - 67345818
Intron Length:
503

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAA
U12 Branch Point Sequence:
TTTTTCTTCACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
85.9
23.9
Major BPS
73.3
0.58
0.9
63.4
35.6
Major PPT
91.6
0.94
0.6
87.6
22.6
Minor 5ss
29.7
-2.3
3
39.4
46.1
Minor BPS
75.4
0.79
1.7
86.69
32.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000010912
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038833
67341143 - 67347418
6276
ENSAPLT00000011371
67341143 - 67346620
5478
ENSAPLT00000046299
67340379 - 67347045
6667
Gene:
Ensembl Gene ID:
ENSAPLG00000011140
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011589
67345243 - 67349123
3881