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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67354065_67354735_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67354065 - 67354735
Intron Length:
671

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGTCTG
5'SS Class:
major
3'SS Sequence:
TGCTTTTATACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
TTTGCTTTTATA
Flanking Amino Acid:
LREELKKERMKQLKHRPPII
Intron Amino Acid Position:
230

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1.1
65.4
46
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
81
0.7
0.9
76.3
36.9
Minor 5ss
36.6
-1.5
3.3
46.2
43.5
Minor BPS
62
0.37
1.7
74.49
37.5

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360
ENSAPLT00000048098
67343998 - 67401786
57789