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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67359005_67359417_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67359005 - 67359417
Intron Length:
413

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTATTTATTT
Flanking Amino Acid:
SFYTKPWSNKETDMFFLAIS
Intron Amino Acid Position:
379

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
81.7
0.71
0.8
73.6
36.9
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
64.4
0.53
1.7
84.57
36.4

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360