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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67361987_67363655_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67361987 - 67363655
Intron Length:
1669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTCAA
5'SS Class:
major
3'SS Sequence:
CACATTGTCTCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
GATGTATTAACT
Flanking Amino Acid:
KPPRPRKKPKVAKAASTETL
Intron Amino Acid Position:
477

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1
68.7
37.6
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
68
0.41
1
64.5
41
Minor 5ss
39.7
-1.2
2.8
49.9
46.3
Minor BPS
59.4
0.37
1.7
74.91
41.4

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011616
67349427 - 67401786
52360
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360