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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67365583_67367485_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67365583 - 67367485
Intron Length:
1903

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTATTTTTA
5'SS Class:
major
3'SS Sequence:
TCTTCTTACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TTCTTCTTACTT
Flanking Amino Acid:
RQSEETRETMNEDTHDLHRR
Intron Amino Acid Position:
686

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72
0.52
1
71.3
34.4
Major BPS
79
0.72
1
80.3
31.7
Major PPT
77.1
0.61
0.8
77.4
30.1
Minor 5ss
50.4
0.01
2.4
64
42.6
Minor BPS
68.5
0.66
1.6
82.74
39.5

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360