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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67367563_67368958_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67367563 - 67368958
Intron Length:
1396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTGGA
5'SS Class:
strong_major
3'SS Sequence:
TTTATGTCTTAAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
GTAATATAAACT
Flanking Amino Acid:
ASESDSLPEIIKTEKPAERG
Intron Amino Acid Position:
711

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
74.4
36.1
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
72.6
0.51
1.1
76
38.1
Minor 5ss
34.5
-1.8
3.3
44.7
43.5
Minor BPS
48
-0
1.9
67.45
42.7

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360