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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67373599_67374242_F

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67373599 - 67374242
Intron Length:
644

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGTTA
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTGAC
U12 Branch Point Sequence:
TTTGCTTTCACA
Flanking Amino Acid:
DMKVVSDFNAGESGPEKQEE
Intron Amino Acid Position:
1003

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.3
0.76
1
75.7
36.7
Major BPS
86.5
0.91
0.8
77.4
37.4
Major PPT
84.6
0.78
0.8
79.7
32.4
Minor 5ss
39.9
-1.1
3.3
47.1
48.3
Minor BPS
65
0.46
1.8
78.6
38.6

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360