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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67379173_67379841_F

Intron Information:

Intron Rank:
23
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
67379173 - 67379841
Intron Length:
669

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TTAAATACACTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTGTTTAAAT
Flanking Amino Acid:
ISENILHEQSSAEQSTSQEG
Intron Amino Acid Position:
1245

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
82.9
23.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
57.8
0.18
1
50
43.2
Minor 5ss
36.1
-1.6
3.2
46.9
48.4
Minor BPS
65
0.55
1.8
83.47
37.5

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360