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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67386140_67387238_F

Intron Information:

Intron Rank:
26
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67386140 - 67387238
Intron Length:
1099

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGATGT
5'SS Class:
strong_major
3'SS Sequence:
ATTATTTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATCAA
U12 Branch Point Sequence:
TGTTTATCAAAT
Flanking Amino Acid:
PVQIEETMEELDISVNIPDV
Intron Amino Acid Position:
1518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
74.2
37.1
Major BPS
79
0.72
1
80.3
31.7
Major PPT
86.3
0.82
0.8
80.5
36.4
Minor 5ss
45.8
-0.4
2.9
65.2
46
Minor BPS
52.2
0.15
1.9
75.7
40.2

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360