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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67391601_67392326_F

Intron Information:

Intron Rank:
31
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67391601 - 67392326
Intron Length:
726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGCCCA
5'SS Class:
major
3'SS Sequence:
TTATATAACTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATATAACT
Flanking Amino Acid:
VVEQLDQIQSESTELRSTAE
Intron Amino Acid Position:
1724

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
64.3
41.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
65.5
0.35
1
64.1
41.2
Minor 5ss
38.3
-1.3
3
45.9
43.3
Minor BPS
63.5
0.5
1.8
84.6
35.3

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360