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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67394431_67395966_F

Intron Information:

Intron Rank:
34
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67394431 - 67395966
Intron Length:
1536

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGCATGT
5'SS Class:
major
3'SS Sequence:
CTGGAAATTATAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATTTCTTTATTT
Flanking Amino Acid:
PCVSSTEETSVVSDDCQCPD
Intron Amino Acid Position:
1848

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.2
63.4
43.8
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
60
0.23
1
51.4
41.6
Minor 5ss
43.8
-0.7
3.3
65.2
46
Minor BPS
71.8
0.76
1.5
85.98
34.4

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011616
67349427 - 67401786
52360
ENSAPLT00000048098
67343998 - 67401786
57789
ENSAPLT00000018607
67349427 - 67401786
52360