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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67400318_67401632_F

Intron Information:

Intron Rank:
38
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67400318 - 67401632
Intron Length:
1315

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTTATG
5'SS Class:
major
3'SS Sequence:
TTGTTTTGAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAC
U12 Branch Point Sequence:
TTGTTTTGAATA
Flanking Amino Acid:
LTESSKTPLLRGGRKPFGFL
Intron Amino Acid Position:
2098

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
76.3
38.9
Major BPS
81.4
0.78
0.9
71.3
36.7
Major PPT
71.4
0.48
1
69.9
40.3
Minor 5ss
45.5
-0.5
2.5
59.8
44.7
Minor BPS
63.7
0.43
1.3
71.2
35.5

Associated Gene:

Gene:
BDP1
Ensembl Gene ID:
ENSAPLG00000024276
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018607
67349427 - 67401786
52360
ENSAPLT00000011616
67349427 - 67401786
52360
ENSAPLT00000048098
67343998 - 67401786
57789