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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67413835_67414099_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67413835 - 67414099
Intron Length:
265

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTATTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TTGTTGTTATTC
Flanking Amino Acid:
RERIDRLIDPGSPFLEFSQF
Intron Amino Acid Position:
46

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.4
0.91
0.9
84.4
33.5
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
79.8
0.67
1
77.7
40.7
Minor 5ss
37.9
-1.4
2.7
44.7
42.7
Minor BPS
48.6
-0.1
2.2
65.04
41.6

Associated Gene:

Gene:
MCCC2
Ensembl Gene ID:
ENSAPLG00000011286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011781
67408598 - 67445867
37270
ENSAPLT00000028513
67406136 - 67438470
32335
ENSAPLT00000017458
67406136 - 67445867
39732