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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67414900_67416790_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
67414900 - 67416790
Intron Length:
1891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTCCC
5'SS Class:
major
3'SS Sequence:
TCATTTACTGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTTACT
Flanking Amino Acid:
MQNHLPCIYLVDSGGANLPR
Intron Amino Acid Position:
123

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
65.8
40.2
Major BPS
100
1.24
0.5
100
0
Major PPT
75.5
0.57
0.8
70.9
34.3
Minor 5ss
29.6
-2.3
2.7
28.8
35.5
Minor BPS
72.3
0.78
1.9
93.91
33.3

Associated Gene:

Gene:
MCCC2
Ensembl Gene ID:
ENSAPLG00000011286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028513
67406136 - 67438470
32335
ENSAPLT00000017458
67406136 - 67445867
39732
ENSAPLT00000011781
67408598 - 67445867
37270