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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67416904_67421584_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67416904 - 67421584
Intron Length:
4681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCCCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
AATTATTTACTT
Flanking Amino Acid:
AVMSSQGIPQIAVVMGSCTA
Intron Amino Acid Position:
161

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
1
71.6
40.9
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
71.7
0.49
0.9
67.5
33.9
Minor 5ss
39.7
-1.2
2.8
50.2
46
Minor BPS
54.5
0.22
1.7
72.28
38.9

Associated Gene:

Gene:
MCCC2
Ensembl Gene ID:
ENSAPLG00000011286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028513
67406136 - 67438470
32335
ENSAPLT00000017458
67406136 - 67445867
39732
ENSAPLT00000011781
67408598 - 67445867
37270