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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67429292_67430182_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
67429292 - 67430182
Intron Length:
891

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTAAAGA
5'SS Class:
major
3'SS Sequence:
CATTTAAATACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATCAT
U12 Branch Point Sequence:
TATCATTTAAAT
Flanking Amino Acid:
EDLGGADLHCRKSGVTDHYA
Intron Amino Acid Position:
220

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.5
0.27
1.2
58.8
39.8
Major BPS
88.2
0.95
0.9
88.3
28.5
Major PPT
70.3
0.46
1
63.3
40.9
Minor 5ss
34.6
-1.7
2.8
41.4
44.6
Minor BPS
60.8
0.42
1.6
77.42
38.1

Associated Gene:

Gene:
MCCC2
Ensembl Gene ID:
ENSAPLG00000011286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000028513
67406136 - 67438470
32335
ENSAPLT00000017458
67406136 - 67445867
39732
ENSAPLT00000011781
67408598 - 67445867
37270