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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67431379_67432672_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67431379 - 67432672
Intron Length:
1294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATAAACA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTCATTCTATT
Flanking Amino Acid:
QLKRNFDVKEVIARIVDGSK
Intron Amino Acid Position:
286

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.6
0.58
1
69.4
34.6
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
85.4
0.8
0.9
91.3
20.9
Minor 5ss
39.2
-1.2
2.9
50
46
Minor BPS
46.4
-0.2
2
70.69
40.1

Associated Gene:

Gene:
MCCC2
Ensembl Gene ID:
ENSAPLG00000011286
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017458
67406136 - 67445867
39732
ENSAPLT00000011781
67408598 - 67445867
37270
ENSAPLT00000028513
67406136 - 67438470
32335