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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67452885_67452962_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
67452885 - 67452962
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTGCG
5'SS Class:
strong_major
3'SS Sequence:
CCGCTGCCCACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTGAC
U12 Branch Point Sequence:
CTCCCGCTGACG
Flanking Amino Acid:
YEKKFGQVPMCDAGEQCAVR
Intron Amino Acid Position:
89

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
67.6
37.6
Major BPS
53.9
0.1
1.2
46.4
38.9
Major PPT
64.3
0.32
0.9
56.5
33.7
Minor 5ss
27.7
-2.6
3
29.4
36.9
Minor BPS
42
-0.7
2.3
48.66
45

Associated Gene:

Gene:
CARTPT
Ensembl Gene ID:
ENSAPLG00000024632
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036277
67452494 - 67453070
577