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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_Z_67549268_67551115_F

Intron Information:

Intron Rank:
126659
Intron Class:
major
Intron Phase:
Intron Coordinates:
67549268 - 67551115
Intron Length:
1848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCAGAGAA
5'SS Class:
major
3'SS Sequence:
TTTTCCCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TAACCGTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.62
1.3
71.3
34.5
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
85.4
0.8
0.7
78.2
30.6
Minor 5ss
25.2
-2.9
3
29.7
43.1
Minor BPS
47.5
-0.1
2.2
67.61
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018272
Chromosome:
Z

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017499
67548640 - 67574176
25537